Single model output object class (when running BIOMOD_Modeling())

Class created by BIOMOD_Modeling and bm_RunModel

# S4 method for class 'biomod2_model'
show(object)

Arguments

object

a biomod2_model object

Details

biomod2_model is the basic object for biomod2 single species distribution models.
All listed classes below are derived from biomod2_model, and have a model_class slot specific value :

• ANN_biomod2_model : model_class is ANN

• CTA_biomod2_model : model_class is CTA

• DNN_biomod2_model : model_class is DNN

• FDA_biomod2_model : model_class is FDA

• GBM_biomod2_model : model_class is GBM

• GLM_biomod2_model : model_class is GLM

• MARS_biomod2_model : model_class is MARS

• MAXENT_biomod2_model : model_class is MAXENT

• MAXNET_biomod2_model : model_class is MAXNET

• RF_biomod2_model : model_class is RF

• RFd_biomod2_model : model_class is RFd

• SRE_biomod2_model : model_class is SRE

Slots

model_name

a character corresponding to the model name

model_class

a character corresponding to the model class

model_type

a character corresponding to the type of data

model_options

a list containing the model options

model

the corresponding model object

scaling_model

the corresponding scaled model object

levels_factor

the levels of the original data for ordinal and multiclass

dir_name

a character corresponding to the modeling folder

resp_name

a character corresponding to the species name

expl_var_names

a vector containing names of explanatory variables

expl_var_type

a vector containing classes of explanatory variables

expl_var_range

a list containing ranges of explanatory variables

model_evaluation

a data.frame containing the model evaluations

model_variables_importance

a data.frame containing the model variables importance

See also

BIOMOD_Modeling, bm_RunModel

Other Toolbox objects: BIOMOD.ensemble.models.out, BIOMOD.formated.data, BIOMOD.formated.data.PA, BIOMOD.models.options, BIOMOD.models.out, BIOMOD.options.dataset, BIOMOD.options.default, BIOMOD.projection.out, BIOMOD.rangesize.out, BIOMOD.stored.data, biomod2_ensemble_model

Author

Damien Georges

Examples

showClass("biomod2_model")
showClass("ANN_biomod2_model")
showClass("CTA_biomod2_model")
showClass("DNN_biomod2_model")
showClass("FDA_biomod2_model")
showClass("GAM_biomod2_model")
showClass("GBM_biomod2_model")
showClass("GLM_biomod2_model")
showClass("MARS_biomod2_model")
showClass("MAXENT_biomod2_model")
showClass("MAXNET_biomod2_model")
showClass("RF_biomod2_model")
showClass("RFd_biomod2_model")
showClass("SRE_biomod2_model")